PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 322aa    MW: 36033.7 Da    PI: 6.415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1846genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv+++k+ G g+W++ ++  g++R++k+c++rw +yl
      Gh_A11G1846 14 KGPWTLEEDQKLVKYIKESGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding54.52.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
      Gh_A11G1846  67 RGKFSQEEEQTILNLHSILGNK-WSAIASRLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.577961IPR017930Myb domain
SuperFamilySSF466891.1E-3011108IPR009057Homeodomain-like
SMARTSM007172.9E-141363IPR001005SANT/Myb domain
PfamPF002499.4E-161461IPR001005SANT/Myb domain
CDDcd001674.52E-111661No hitNo description
PROSITE profilePS5129426.27962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2765117IPR009057Homeodomain-like
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1667112IPR001005SANT/Myb domain
CDDcd001672.61E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTLE EDQKLVKYIK ESGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIASRLPGRT DNEIKNFWNT HLRKKLIQMG  120
IDPMTHRPRI DIFSSLPHLI ALANLKELMD QQQPWEEAAQ MAKLQCLQYL LQNPPSLSSP  180
SNNMHTTFTD METMDISNSL LSSPPQLASV QGLDDSNPFS RLPDLQIPCD YRISSSSKDD  240
TAQAQAQAQA QAQAQEHAVL SQGENTCNST WLPSPSAVPS VTETLISNLG DASCSSNFDV  300
AAPSVWLDDH QLFQDPLFHN LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488260.10.0PREDICTED: myb-related protein 330
TrEMBLA0A0D2SIU40.0A0A0D2SIU4_G
STRINGPOPTR_0007s05360.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-98myb domain protein 93